Directory Tree

The installation of the PMOD software results in directory tree containing the Java classes, configuration information, installers for the USB key driver, and example data for kinetic modeling data and image analysis.

PMOD Directory Tree

The contents of the most important sub-directories is:

data	Container for data. DATABASES contains the tables and data of JavaDB databases, for instance of the example Pmod database.
doc	Directory containing the PMOD html documentation as well as the pdf application guides.
hksetup	Contains the driver installation files for the USB protection key. Each operating system has a dedicated sub-directory.
java	The ext sub-directory contains external Java libraries which support specific functions accessed from within PMOD. The jre sub-directory contains the Java Runtime Environment for running the PMOD applications. The jre is not required for MacOSX.
pmclass	The PMOD program consists of more than 1000 Java class files, most of which are collected in the pmod.jar. The pmclass directory tree containing only those parts of the program which can be configured as plug-ins, for example the kinetic models.
properties	Contains the configuration of PMOD and the different tools. `properties/system:` log files `properties/system/lcs:` license file `pstarter.lcs` `properties/system/logo:` customer logo `properties/system/logs:` log files of PMOD program and the servers `properties/user1, etc:` Each PMOD user has a subdirectory containing his configuration of the different tools (.props), the starting settings (.ini), and the database queries (*.qry).
Start	The PMOD start scripts are located here. They are generated during the installation and take into account the installation directory and the operating system. Therefore, they can not simply be copied to another system or moved to a different directory. RunPmod: starts the interactive PMOD environment. RunDbSvr: starts the transaction server for publishing the Pmod database and for license serving. Default port of the transaction server is 5100. Please edit the script for using a different port. RunDcmSvr: starts the DICOM server for receiving DICOM images and saving them into the Pmod database. Default port of the DICOM server is 4030. RunLcsSvr: starts the transaction server for license serving only.